Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802473.1a with 1 members (Flavin reductase like domain-containing protein)

Eukaryota / Sar / Rhizaria

Completeness score: 0.33

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This HOG has 103 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0990881.68l	110	262	flavin reductase domain protein FMN-binding
2	HOG:E0990881.67e	96	120	flavin reductase domain protein FMN-binding
3	HOG:E0990881.68l.144a	29	31	flavin reductase domain protein FMN-binding
4	HOG:E0990881.67a	25	27	flavin reductase domain protein FMN-binding
5	HOG:E0990881.67e.87b	19	19	flavin reductase domain protein FMN-binding
6	HOG:E0802473.3c	12	59	Flavin reductase like domain-containing protein
7	HOG:E0990881.68l.132c	10	19	flavin reductase domain protein FMN-binding
8	HOG:E0990881.66d	8	31	flavin reductase domain protein FMN-binding
9	HOG:E0990881.68j	7	44	flavin reductase domain protein FMN-binding
10	HOG:E0990881.59e	6	6	flavin reductase domain protein FMN-binding
11	HOG:E0990881.55a	6	7	flavin reductase domain protein FMN-binding
12	HOG:E0990881.68j.119b	5	5	flavin reductase domain protein FMN-binding
13	HOG:E0990881.68j.118a	5	6	flavin reductase domain protein FMN-binding
14	HOG:E0990881.68l.141c	4	4	flavin reductase domain protein FMN-binding
15	HOG:E0990881.68l.132b	4	5	flavin reductase domain protein FMN-binding
16	HOG:E0802473.1b	4	14	Flavin reductase like domain-containing protein
17	HOG:E0990881.63b	3	3	flavin reductase domain protein FMN-binding
18	HOG:E0990881.56b	3	5	flavin reductase domain protein FMN-binding
19	HOG:E0990881.51c	3	6	flavin reductase domain protein FMN-binding
20	HOG:E0990881.48b	3	6	flavin reductase domain protein FMN-binding
21	HOG:E0990881	3	2749	flavin reductase domain protein FMN-binding
22	HOG:E0802473.3b	3	4	Flavin reductase like domain-containing protein
23	HOG:E0802473.3a.4b.3a	3	3	Flavin reductase like domain-containing protein
24	HOG:E0802473	3	340	Flavin reductase like domain-containing protein
25	HOG:E0020000.3a	3	5	flavin reductase

Showing 1 to 25 of 103 rows rows per page